I think, ultimately, that this super asymmetry saga will be solved by somehow having Amy and Sheldon come out on top.
How annoying would it be if we watched these two struggle with all this an entire season, only to have to watch them lose such a major battle near (or at) the end of the entire series?
I suspect that there might be some more tough times ahead after Amy’s outburst, but the university has been behind her and Sheldon all the way, and Sheldon has also stood by her as well, despite the fact that it might stop him from reaching one of his main goals in life.
Now, the big question is, after making such a scene at the luncheon that was supposed to get everyone to support her and Sheldon to be nominated for the Nobel Prize, will Amy’s behavior lead to her getting cut out, just so that Caltech can try and save face?