Even prior to the premiere of Gilmore Girls: A Year In The Life, Amy Sherman-Palladino was busy talking about how her series has never really been about the men in Rory’s life.
As Sherman-Palladino noted in her interview with THR, there aren’t a ton of people who could potentially be the father of Rory’s baby.
The most likely suspect is obviously Logan, unless the show really would choose to stretch things to make it the Wookie or the nearly invisible Paul.
Looking back, I suppose that should have been a huge clue regarding the ending to the series, but I was still pretty shocked when the last four words—the four words that Amy Sherman-Palladino has been teasing for a long time—ended up revealing that Rory was pregnant.