It’s more likely Hetty sent Fatima on something a little more pressing and dangerous, though her series regular status probably means she’ll ultimately be fine.
There is no word on whether or not Scottie Thompson and Medalion Rahimi’s characters are fated to meet.
That said, don’t be surprised if she reconnects with the team after needing rescue from an operation similar to what happened with Eric Beale.
I would wager no for now, but only because Fatima’s expertise in cryptology and the Middle East does not seem to mix with Thompson’s Sarah Raines, who is tracking “unidentified aerial phenomena sightings.”